Here is a large table of codes that I use. The code names are (mostly) in alphabetical order. The individual directories holding the web (html) documentation for each code are located in $scohtm/scocodes, and each is referenced in this doc (Big_Code_Table.html) using a table style.

Use the recalr routine to aid in recalling routine names.


Table of Codes (Last Updated: July 11, 2020 )


Name Source Task (Link) Extra Comments
1d2table bash Convert a 1-d file to a table. user specified basename
2mass_00.py python Process a 2MASS catalog. Creates a cdfp file.
2mass02 bash Query 2MASS PSC Output to 2mass.cat.
acam_fake bash Simulate ACAM with WCS local B.fits
acam_ihmp_mark bash Mark IHMP center see also wcs_outline
acam_nearest bash Locate ACAM closest in time O2SO
acam_posang bash Output ACAM position angle O2SO
acam_plots bash Plot ACAM wcs parameters Uses FITS images
acam_wcs_stats otw Assemble ACAM (WCS) FITS info O2SO
acl.py python Find PAS images in UT interval local file = acl.out
AcmRunDate bash Process acm night Various files
ACM_ANALYSIS_TABLES bash Assemble ACM tables Various files
acm_* bash ACM routines (Dec2016) Various routines
acm_bias_for_date bash Prepare acm bias for a date BIAS.DATA,fbp.table
acm_bias_singles bash Assemble bias frame data by date acm_bias_singles.table
acm_ccd_fixup bash Fixup a list of acm images image to ./local_reds
acm_bias_run bash Take acm bias/dark frames Only mcs
acm_ccd_correct bash CCD-process acm images Various
acm_global_stats bash Compute acm stats O2SO+
acm_hdfix_list_markII bash Fix acm headers ./local_red
acm_basic_list bash Gather acm info O2SO+
acm_list bash Summarize acm night O2SO+
acm_list_markII bash+ OTW-revised acm_list acm.dat ascii file
acm_nights bash Survey acm images by UT date O2SO+
acm_nights_markII bash Survey acm images by UT date O2SO+
acm_skysb_stats bash Install SkySBi+ into FITS header/td> Updates FITS header
acm_stack bash Combine acm images Big_Stack.fits
acm_image_table bash Review properties of a list of acm images EXTREMELY USEFUL == Sete WAVELEN
acm_table bash Review properties of acm images EXTREMELY USEFUL
acm_table_markII bash+otw Quickly review acm images USEFUL and FAST
acm_table_qc bash Quick cech a table file with imgtype values EXTREMELY USEFUL
acm_wcs_check0 bash Compare old/new acm WSC Useful
acmred bash process a raw acm image ./local_red
acmred_list bash wrapper for acmred ./local_red
acmt bash View acm images by time window ds9_view
acmwcsinfo bash give wcs info O2SO
acm_xy_graphical bash Find IHMP center on acm O2SO
active_imgcat0 bash Prepare file for ds9_imgcat0 use Active.Images
afc bash ACAM finding chart makes *png file
all_probes bash Get current probe positions O2SO and probe.* files
angs2pix otw Convert angstroms to pixels O2SO
apphot bash Measure aperture photometry various files
apphot_interactive bash Run apphot steps interactively various files
awk_and_sed bash+ awk and sed Various examples
badpoint_check bash Check for name in a list O2SO
bash_script_list bash Compile list of scripts list.BASH
basic_fits_info bash Output basic image info O2SO
bashr bash Bash file reader O2SO, Kth word on Nth line
best_wcs_image bash Identify best WCS image best_wcs_image.out
biblook bash Inspect BIB image to find peak. O2SO
bigds9 bash View many images at one time O2SO
big_stack bash Combine a large list of images O2SO
botw bash Compile/Install OTW code none
boxpix otw Write image pixels in a box O2SO
build_htm_img bash Build an html figure. OS2O
build_tmp bash Preapre for sco code install. O2SO
caldif bash Compare calibration image sets O2SO+
calstats.py python Compute simple statistics. O2SO
calsurvey bash Survey image properties for cals O2SO+
cat_line_pairs bash Assemble line pairs in a file O2SO
cat2q bash Compute parallactic angle. MANY USEFUL TASKS and NOTES!
c2r otw Predict Ra,Dec boundaries O2SO
ccdrev bash Review CCD FITS header O2SO
ccdrev.py python Process ccdrev output O2SO
ccdsize bash Show image NAXIS1,NAXIS2 O2SO
ccl4 otw (4-)Connect component label pass2.fits
cdfp00 otw Process Ra,Dec coordinates Reads/Writes a *.cdfp file.
cdfp2reg otw Generate a ds9 region file specify size and color of circle
cdfp2table otw Build table file from cdfp basename table file
cdfp_build bash Build cdfp file Combine list.* files
cdfp_filter otw Filter a cdfp file O2SO
cdfp_filter_by_linenum otw Filter a cdfp file by line number Usedul for WCS and ZP cals
cdfp_from_imgcat0_markII bash cdfp from image_catalogs table cdfp file
cdfp_in_image otw Find cdfp targets in an images cdfp.NEW_FILE
cdfpmatI otw Cross-match cdfp files Only matched objects returned.
cdfp_proj otw Apply gnomonic projection Uses Ra,Dec in cdfp file
cdfp_rd_by_name bash Find cdfp RA,DEC by name O2SO
cdfp_rdlists.sh otw Extract Ra,Dec lists hard-coded ASCII files
cdfp_rdxy otw Generate Ra,Dec and/or X,Y files CDFP as input
cdfp_ds9_text_reg bash Build ds9 text region file Good Notes on many tools
cdfp_sky2xy bash Find cdfp star on an image (with WCS) TBD-Sep2017
cdfp_usno_wcs_stars otw Select USNO "stars" O2SO (>usno.cdfp)
cdfp_xyrdnames otw Build x,y,ra,dec file. For new markII WCS (Oct2016)
cih otw Compute image histogram. Locate peak (SKY)
circles_file_ds9.py python Build circle region file. Reads a file.
circles_trans otw Rotate X,Y,R coordinates. Reads a file.
cghfix bash Fix HET Commissioning FITS headers. Needs Ra,Dec,AZ
clip_* otw Command Line Image Processor Various tasks
clip_build_fits.sh otw Build a FITS image. user-specified name
clip_delhead otw Delete header cards Overwrite input image
clip_gethcards otw Extract header cards clip_gethcards.out
clip_margdist_sub_plotter bash Plot and fit marginal distribution O2SO+
clcf_* otw Command Line Curve Fitter Various files
clip_bigtrim otw Trim Images.ge.2048 klugy but useful!
clip_imhist.sh otw Compute image histogram table file +
clip_imshift_trs otw Transform an image coordinate system Use trs_ methods
clip_imstat otw Basic stats in a box O2So and fixed file
clip_margdist otw Compute (col,row) marginal distribution 2 FITS and a table file
clip_margdist_sub otw margdist for sub-image table file only
colget.py python Extract a file column File must have "# data" header
collect_pas_timeset bash collect PAS images by time image subdirectory
column_fake bash Build a column O2SO
column_from_table bash Pull column (by name) from table file name specified
combine_cats bash Combine 2MASS,USNO,SDSS Recipe may change!
combine_waversols bash Combine wavelength solutions O2SO+
convert na Convert image types ImageMagic
config_val_get bash Read parameter values from a config file config_val_get.out PRIMAL,dude!
curve_fit bash Fit curves to (mostly) XY data O2SO+
curve_runner bash Interactively fit XY data Uses xyplotter_auto
curve_maker bash Generate and plot model curves O2SO+
cursor6.py python Use matplotlib cursor Get X,Y and button
cut_by_line bash Extract file lines Output name specified by user
dac bash ACAM finding chart Quick finder chart
dali bash Display/process acm images VERY USEFUL
data_archive bash Setup and fill a data archive O2SO
data_strip bash Strip out header of a table file data_strip.table
datelist.sh otw Generate a list of staes O2SO+
delhead wcstools Eliminate FITS header cards. D.Mink, saord
delwcs wcstools Remove WCS from FITS header D.Mink, saord
display_image_list bash Display a list of graphics files. O2SO+
display_multiple_ds9_regions bash display images and regions O2SO, modern
disk_list_locdirs bash list local subdirectories O2SO+
disk_survey bash summarize local subdir trees O2SO+
do_acm_night bash Process a night of acm data O2SO+
dsi bash Give IFUSLOT number and offsets O2SO TEMPORARY
ds9_adjust_view bash Adjust flip and rotation For current ds9 frame.
ds9circle bash Generate a circle region line. O2S0
ds9_2f bash Two-frame ds9 run. Cross-match stars in images
ds9_2f_markII bash Two-frame ds9 run. Uses ds9_view_makrII
ds9_2f_with_cat bash Two-frame ds9 (with catalog) Cross-match stars in images
ds9_frame_view bash Display image in ds9 frame specify frame.
ds9_get_circle_text bash Get circle region name ds9_get_circle_text.out
ds9_list_load bash View and Select images from a list. List.New
ds9_imgcat0 bash Visualize imgcat0 results. O2SO
ds9_imstats bash Set and measure image regions. The ULTIMATE wrapper!
ds9_imstats_run bash Run ds9_imstats on list. local_red
ds9_midomark bash Overplot MIDO sources. Uses mido.out from *.info file
ds9_multi_view bash View multiple images
ds9_id bash View and measure an image. bash shell version of ID
ds9_open bash Open ds9 gui Specify size.
ds9_region_circle2point bash Switcg circle to point marker new region file
ds9_region_xyshift.sh otw+ Shift a ds9 region file VERY USEFUL for ds9 regions
ds9_region_saver bash Save ds9 region files VERY USEFUL for ds9 regions
ds9_strip bash Turn off ds9 gui features O2SO
ds9_paint_radec_circles bash Paint labele Ra,Dec circles For current ds9 frame.
ds9_profiles_x bash Measure profiles (Experimental) Many USEFUL file(s) for demo
ds9_rd_ifu bash Derive Ra,Dec of IFU O2SO (gstar2 ds9 window)
ds9_rwcs bash Use ds9 to revise WCS stars. Builds a revised wcs_setup.out file
ds9_set_xy bash View image and set X,Y. VERY USEFUL!
ds9_view bash View image in a ds9 gui Specify image,z1,z2.
ds9_view_markII bash View image in a ds9 gui See "--help" option.
ds9_xymatch bash Solve XY tranformations Useful high-level code
ds9regget otw Extract ds9 regions O2SO
dss_store bash Store a DSS image. store dss.fits in ./Store_DSS
dss_store_markII bash Store a DSS image and catalogs. store data in ./Store_DSS
dssbase bash Gather DSS image and catalogs. Simple DSS collector.
dssbase_bestmatch.sh OTW Find closest dssbase set. Best.DSS
dssbase_list bash List contents of Store_DSS directory. O2SO+
dssbase_locate bash Position match to dssbase images. O2SO+
dssbase_review bash Review dssbase images and catalogs. O2SO+
dssbase_run_markII bash Conduct multiple dssbase runs. ./local_red/Store_DSS/
dssg.sh otw Get DSS image. Uses J2000 seexigecimal position
dssget bash Retrieve a DSS image. wget bash script
east_or_west bash Give direction. O2SO
ellradius.sh otw Construct (elliptical) radius map. output = rad.fits
encode2mass otw URL-encode Ra,Dec string. standard output
estimate_azhet_hetq bash Estimate AZ and HETQ. O2SO
etime_in_sec bash Ref-rmat EXPTIME card values. etime_in_sec.out
event_timer_demo bash How to measure a time interval. O2SO
exposure_cal bash Estimate CCD exposure time. O2SO
extract_wcs_hcards bash Extract WCS cards from FITS image. clip_gethcards.out
fast_acm_nights bash A fast version of acm_nights fast_acm.nights_SUMMARY
fast_imgtypes bash Assemble lists by image type fats_imgtypes.out
find1.sh otw Compute and fit contours SCO otw script
find_filter.sh otw Identify image filter SCO otw script
find_ihmp_on_acm bash Rederive shuffle acm parameters O2SO+
find_object.sh otw Identify image object name SCO otw script
find_parlab otw Find a parameter label O2SO
find_r50 bash Find mean half-light radius. O2SO
find_table_column_num otw Find table column number O2SO
fits_review bash Review and update FITS images O2SO
fits_headfix,sh otw update FITS header cards O2SO+
fits2table bash Make a table file from headers Table file(s)
fitskw otw List FITS keywords O2SO
fitsfind bash Find FITS files O2SO
fitsfind_markII bash Find FITS files fitsfind.out VERY USEFUL!
fitslists bash Prepare FITS information files O2SO+
fitslist_run bash Process a list of FITS files O2SO
fgstar bash Visualize IHMP projected on the sky O2SO+
flag_outliers otw Flag bad point in a table file O2SO+
float2sex otw float to sexigecimal. O2SO
fpmath otw do floating point math O2SO
gen_curve.sh otw generate a curve O2SO
gen_noise otw generate noise data O2SO, Deprecated, use gendata
gendata.sh otw generate a string of data values O2SO
Generic_Points bash prep for xyplotter_auto xyplotter_auto.pars
genread_shuffle_info otw Read shuffle information O2SO
getfits wcstools Cut sub-image and preserve WCS. D.Mink, saord
gethead wcstools Print FITS header card values. D.Mink, saord
gethead_1card bash gethead for a single card. O2SO
getNline bash Get line N from text file. O2SO
getspec_from_fits.py python Read a FITS spectrum. Uses pyfits and looping!
gcpic_draw bash Plot guide probes on DSS image like het_acam
gnomonic otw Various projection tasks O2SO
gpxytest otw Test guide probe position O2SO
gstar bash Locate a star for probe Uses gcpic_ series
gstar2 bash Derive a new IHMP position Uses gcpic_ series
gspars bash retun gstar-related values O2S)
gwcs bash Manually build X,Y,Ra,Dec file Builds wcs_setup.out
gwcs_with_cat bash Build X,Y,Ra,Dec file (2) Builds wcs_setup.out
hacalc_chek otw Check HET track status O2SO (needs hacalc.out)
halt_script bash Halt a script (debug tool) O2SO
hcards_1card otw Build header card with comment ascii.card
hcards_wcs otw Build WCS header cards two versions created
hcards_wcs1 otw Build WCS1 header cards Output name specified
headrev otw Install FITS header cards None
het_acam bash Paint ACAM+VIRUS field. Still in development!
hetAZinfo bash Compare AZ and HETQ values. O2SO
hetaz.py python Use DEC to predict HET Azimuth Uses tuple from optaz (scomods)!
hetparangle otw Compute HET parallactic angle. MANY USEFUL NOTES!
ID lmgf Identify ds9 markers in an image. NONE
ifu_shift bash Shift target to IFU position used by gstar2
ifu_view bash View 4 spectral channels VIRUS, LRS2-B, LRS2-R
ifuslot bash Give X,Y in IHMP system O2SO
install_scohtm bash+ Installscohtm (html notes) OS2O
image_catalogs bash Build source catalogs ./local_red
image_catalogs_review bash Review source catalogs O2SO+
image_filter bash Return name of filter O2SO+
image_fullpath_list bash Prepare lists for image processing 2 output versions
image_process_list bash Prepare lists for image processing LIST.IN, LIST.OUT
image_pa bash+ Derive PA for image with WCS OS2O+
image_ps bash Derive PS for image with WCS O2SO
image_size bash Give FITS image size and midpoint in pixels OS2O+
imgcat0 bash Build an image source catalog Numerous images and files
imgcat0_apmags bash Compute aperture magnitudes. Advanced analysis
imgcat0_region_files bash Read imgcat0 files. Prep for imgcat0_apmags
imgcat0_ds9reg_make bash Make a regions for imagcat0 catalog ds9 region file
imgcat0_viewer bash Grapically review imgcat0 run. Pretty fancy
imgdefps bash Assign default plate scale O2SO
imgt bash Find image type O2SO, First use of optional argument
imlook bash View image Adjustable high grey-scale (z2)
impuller bash Copy images to local dir. OS2O
imstats_view bash View histograms for image boxes OS2O+
iput_list_run bash Install bash scripts install in $scobin/bini
iset_stacker bash Stack a set of images. ./local_red/ISET_STACKS
isetwcs bash WCS for acm image set. Various
just_fitsname otw Extract basename of FITS path O2SO
just_imagename otw Extract basename of image file path O2SO
lac bash View and process last ACAM image. mcs only
lastim bash List last PAS images. O2SO
lil_shifts bash Measure small image shifts. Use ds9 and xy_shift_stats
linecnt bash Return file line count O2SO
lineget.py python Extract a line in a file File must have "# data" header
linefit otw Fit a line to xy data. O2SO and explain file
line_resid otw Compute (normal) line residual. Demo for line OTWLIB line_subs.f
list_imstats bash Mean stats form a list of images list_imstats.out
list_split_exptime bash Split image list by EXPTIME multiple files
list_split_filter bash Split image list by FILTER multiple files
lmap bash View LRS2 observations. spectra and spatial map
lmap_markII bash View LRS2 observations (upgraded version). spectra+,spatial map
lmap_solutions bash Derive trs.LRS2_to_ACAM_B,R files. Archive directory
lmap_peaker bash Peak detection to locate LRS2 fibers. O2S0+
lmap_waver bash Derive LRS2 wavelength solution. local subdirectory
looptest_demo bash Demonstarte a looping file read. Good example.
lrs2_bias_sub.sh otw Trim and bias correct LRS2 image. lrs_bsub.fits
lrs2g bash Setup LRS2 observations. NONE
lrs2see bash View LRS2 images by channel. VERY USEFUL
lrs2stars bash Pick wf,gc stars for LRS2. ds9 tool
lrs2_acam_xy bash Transform LRS2,ACAM coordinates. O2SO
lrs2_imset bash Output LRS2 image names by channel. Name.Lower ,Name.Upper
lrs2info bash Give LRS2 information High Level - Useful!
lrs2_view bash View LRS2 spectral images. DEPRECATED = Use ifu_view
lrs2_xy bash Transform lmap coordinates. O2SO
lrsfix bash Fix LRS header coordinates. NONE
lrs_rotate bash Adjust LRS display to N-up Recognizes LRS DETECTOR
lvd bash List LRS2/VIRUS data directories. TBD
lvimages bash Locate LRS2/VIRUS images. TBD
mac_newline_delete bash Delete MAC newline characters. Uses sed
make2dimg otw Build 2-d model image. model.fits
make_circles.py python Build fk5 regions file. Make *.cdfp.ref file
make_fit_data bash Generate test data file. make_fit_data.out
make_parlabs otw make a table parlabs file O2SO
masklogic.sh otw Logically combine mask files. User-specified output mask name
mcdLST.py python Compute LST for McDonald O2SO
mcdsky otw Compute McDonald sky positions O2SO+skycal.ascii
meangrowthcurve.sh otw Compute mean flux growth curve meanGC.table
mean_region_stats bash+ Gather stats for ds9 regions mean_region_stats.out
message_and_read bash+ Print message, read response O2SO
mido.sh otw Measure image photometry. Uses id.objects (see obj_id_build)
mido2.sh otw More modern version of mido.sh Various products
mido2cdfp otw Write MIDO data to cdfp file. Uses midodata output Obsolete
mido+cdfp+id otw Combine mido and cdfp data. O2SO
midodata otw Extract MIDO/mido data . Uses *.info file.
midophot2cdfp otw Calibrate mido data. *.cdfp file
midophotcat otw Calibrate mido data. table,cdfp files
midophotcat_prep bash Setup for midophotcat Y/N to OSSO, RD files
midoq otw Query a record in *.info file O2SO, Handy Template
midoquery bash Wrapper for midoq.sh O2SO
midowcs otw Ra,Dec from mido data. RD.table,parlab
mli_copy bash Make local image copy O2SO
mli_copy_markII bash Copy image to local archive O2SO
model_images_1 bash Build composite model images. O2SO+
momcat.sh otw Catalog image moments. Pixel_Mask required.
moonsky bash Install moon properties in header FITS header
mpl bash List matplotlib point info none
multi_acm_bias bash Study acm bias by UT date various
my_targets bash HET targets in track? O2SO
namelist bash Make alist of (line number) names Use a counting WHILE loop
new_pas_images bash Make a list ofthe new PAS images user-specified name (arg3)
normit.sh otw normalize a string of numbers O2SO+
number_lines bash List a file using line numbers O2SO
obj_id_build otw Build id.objects file. Takes ds9 regions file.
oned_imarith otw Arithmeticly combine data files iOne-column data tables
onsky_set bash Extract an onsky set of images file = "List.FINAL_ISET"
padded_integer otw Construct zer-padded integer padded_integer.out
paint_table_sources bash Paint imgcat0 ds9 regions O2SO
param_set bash Set parameters values O2SO+, old-style, see config_val_get
params_4_fits_review bash Set parameters for fits_review O2SO
pas_imlistgen bash Build PAS image list List0 Best PAS list generator
pas_timelist bash Assemble PAS time list file arg2 sets output name
pas_devname.sh OTW Give instrument of a PAS image O2SO
pas_times.sh OTW Useful times from PAS name O2SO
pas_time_window_sets bash Gather PAS images by time subdirectories
pas_XY_offsets.sh otw Compute mean coordinate offsets O2SO
pasinfo bash Give PAS image information High Level - Useful!
paga bash Process a list of acm images images to ./local_red
pasa bash Process a single acm image images to ./local_red
pasclean bash Clean PAS image header writes local image
pasname OTW Derive time from a PAS filename O2SO
path_replace bash Replce parts of fullpath filenames user-specified name
pix2angs otw Convert pixels to angstroms O2SO
photcal_fitslist bash derive ZP for list of images O2SO+
point_selector bash Select points with cursor. INTERACTIVE X,Y CLEANING
point_selector_stats.sh otw Comput xyf.in stats. point_selector_stats.out
precess.sh otw Precess coordinates. NONE
precess_list bash Precess a list of coordinates. User-specified output name
profile_plotter bash Build profile plot. Use ds9_profiles table files
profiles.sh OTW Efficiently compute image profiles. various
profiles_plotter.sh OTW Plot profiles from profiles.sh png plot file
profiles_prep.sh OTW Preapre for profiles.sh run image_basename.profpars
profpars.sh OTW Set profile parameters. Used by ds9_profiles
psex.py python Reformat sexigecimal Ra,Dec O2SO
pafind otw Derive image position angle O2SO
pfc_hdfix_list bash Modify PFC image headers ./local_red/HDFIX
pfcred_list bash Reduce PFC image sets ./local_red
phot2 bash Secondary photometry Revised image
phot2_fitslist bash Run phot2 on a list of images Revised images
photom2_prep bash Prepare to refne photometry O2SO+
pickles otw,bash HET pickle codes O2SO+
probes bash Get FPA probe info O2SO
process_acm_bias bash Prepare acm bias files OS2O+
ps1.py python Gather online PS1 data PS1.cat
ps1_cdfp bash Gather cdfp file of PS1 data ps1.cdfp
ps1_setup bash Establish gri data for ZP ./local_red/ZPTAB/griBVR.cdfp
psfind otw Derive image plate scale O2SO
ptools python Coordinate conversion tools. Assorted python tasks
pxy_SM_plot.py python Plot multiple X,Y data. BEST VERSION
pxy_S_scat.py python Plot X,Y data DEPRECATED
pxy_SM_scat.py python Plot multiple X,Y sets DEPRECATED
pxy_Serr_scat.py python Plot single X,Y with errors DEPRECATED
quadadd.sh otw Add two numbers in quadrature. O2SO
ra_dec_offsets bash Compute RA,DEC separations. O2SO
ra_dec_sep lmgf Compute RA,DEC separations. Interactive
RadCon.py python Prepare for a cone search O2SO
rc3_name_match.sh otw Match a list of names to RC3 O2SO
rc3gal bash Search RC3 by name O2SO
RC3TOOLS lmgf Gather RC3 data. Obsolete (but works)
rd_degs_list.py python Convert Ra,Dec sexigecimal form O2SO
rd_repeats_flag OTW Find unique Ra,Dec positions rd_repeats_flag.out
rd2sex otw RaDec float to sexigecimal. O2SO
recalr bash Help remember routine names O2SO
redshift.sh otw Compute radial velocity O2SO+
redshifter.sh otw Compute redshifted wavelengths redshifter.table
reg_from_imgcat bash reg file from image_catalogs run Very Useful
remove_fits_kwords bash Clean FITS header Use delhead
rngc otw Query RNGC O2SO
rot bash RA Observing Tool IN DEVELOPMENT
rounder otw Reformat floating point number O2SO
rotafind otw Derive image rotation angle O2SO
rough_wcs_[Image] bash Add rough WCS header Interactive ds9 gui
rwcs_markII bash Derive WCS for an image. High-level script (2 fitting methods)
Save_codes bash Save sco cource code tarball+ to $pack
Save_scohtm bash+ Save scohtm (html notes) OS2O
savetar bash Save to a tar file in $pack OS2O+
scocodes1.py python Survey $scohtm/index.html O2SO
sdss01 bash Query SDSS Output to sdss.cat.
sdss_00.py python Process sdss01 result Output to sdss.cdfp
search_ds9reg_by_name bash Find ds9 region by name. O2SO
select_file_lines bash Pull lines from a file. O2SO
select_pas_images_by_time bash Select PAS images bu UT time. user-specified table file
sethead wcstools Edit FITS header card values. D.Mink, saord
sex2float otw sexigecimal to float. O2SO
sex2rd otw Convert sexigecimal Ra,Dec. O2SO
sexcd bash Print sexigecimal Ra,Dec O2SO
sexform_cleanup bash Make uniform format Ra,Dec O2SO
sexprep otw Standardize sexigecimals O2SO
show_help bash Show help for SCO bash scripts Must set SCOHELPS system variable
show_wcs_points bash Display data from wcs_setup.out pre-existing ds9 image
single_hdfix bash Modify a single FITS header O2SO+
sit bash Shuffle Interactive Tool HET oberving tool
skycal lmgf Useful OBSERVING Tool skycal.sh for McDonald
skygrab bash Get DSS,USNO,2MASS,SDSS ds9 view option.
skymap2 otw Derive robust sky statistics skymap2.fits,out
skymoon bash Install moon properties in header O2SO+
skyprops_fitslist bash Install skySB and moon cards O2SO+
skysb_mido bash Derive and install skySB info Header installs
skysb_stats bash Compute mean skySB O2SO+
spec_lines_show bash Overplot spectral lines in ds9 specify frame #
spec_lines_refit bash Refit a wavelength solution specify frame #
speclines.sh otw List spectral lines O2SO
split_table_by_selector otw Use xyf.in to divide a table file Marked,Not_Marked tables
stack_mod.sh otw Find substack number. O2S)
STACKER lmgf Combine FITS images. stacker.in for input
star_dens bash Compute star densities on sky Output file specfied
stats_outliers.sh otw Identify statisticals outliers stats_outliers.flags
stats bash Compute statistics O2SO
survey_headers.sh otw Survey image headers user-named table file
survey_images.sh otw Compile image statistics survey_images.dat
table_checker bash Check properties of a table file O2SO
table_column_fake bash Make a fake table column user sets out filename
table_column_find bash Find column number in table file user sets out filename
table_column_math bash Apply mat operator to 2 columns user set filename
table_column_pull bash Pull a column from a table file O2SO
table_stats otw Compute stats for a table column O2SO
table_ds9_imstats.sh otw Compile ds9_imstats from tables mean statistics for one parameter
table_ds9_panner bash Pan to sources from a table plot O2SO
table_fprange_mask bash Build table selection mask. user-specified output file
table_mask_builder bash Apply multiple table rules table, mask file VERY USEFUL
table_mathop bash math operation of 1 column result added to table
table_merge bash Merge two table files user specified
table_onsky_sets.sh otw Identify sets of target images table file
table_point_selector bash Graphically select from an X,Y space data files
table_text_mask bash Build table selection mask. user-specified output file
table_xy_boxclean bash Graphically clean an X,Y space data files
table_XY_offsets.sh otw Compute mean coordinate offsets O2SO
targinfo bash Get info for HET targets O2SO
test_proj bash Test gnomonic projection Runs cdfp_proj.sh
text_file_ds9.py bash Generate ds9 text regions O2SO
thresh otw Build a threshold image. Used in find1.sh
tim_* otw Build TEST images. Model FITS images.
tim_circle.sh otw Build test image with a circle Model FITS images.
tim_stripes.sh otw Build linear gradient test image Model FITS images.
_trans otw Transform region files. ASCII input files
trs_ otw,bash,python Transform XY coordinates Lot's of stuff!
timedate bash+ Time and Date tools. perform time/date jobs
timenow otw Give date/time O2SO
txts bash Search for tesxt strings in files O2SO
tzgather bash Derive the shuffle acam parameter O2SO
ubcone c Query USNO B1.0 catalog c code, S. Levine
ubc01 bash Run ubcone Output to UBC01_usnob.asc
uhpwg otw Find unique html graphic paths uhpwg.out
usno_00.py python Process ubcone result O2SO (>usno_all.cdfp)
usno_look bash Gather USNO and DSS data Various products
usno_look_wcs bash Gather USNO data for an image with WCS Various products
usno_look_wcs_run bash Easy wrapper for usno_look_wcs Various products
usno_identify bash Identify stars with USNO,DSS data 2-frame ds9 tool
usno_photcal bash photometic ZP from USNO data O2SO+
utdatemoon otw moon info for UT date O2SO+
verb_chek bash Check script status O2SO (activated by ./Verbose.On)
vir_ifu_pat otw Generate VIRUS files. files + O2SO(optional)
vir_view bash View VIRUS spectral images.
virims bash Select and list VIRUS images. virims.out1
vtabread.py python Extract VIRUS IFUSLOT data O2SO (lot's of notes here!)
VTemps bash Check VIRUS for bad temps. O2SO
waversol_refine bash Fit wavelength solution residuals O2SO+
wcs_adopt bash Select 2lin or trs WCS O2SO
wcs_ask bash Is WCS present in header? Y or N to standard out
wcs_build_radeclist bash RA,DEC from WCS image wcs_build_radeclist.out
wcs_cdfp_refit otw Refit rough WCS O2SO+
wcs_center bash Estimate Ra,Dec of image center using WCS Ra,Dec,Equ,Xmid,Ymid to O2SO
wcs_doall bash High level WCS tool Runs WCS tasks
wcs_final_head bash Build a full WCS image. Add header cards and rename image.
wcs_fstack bash WCS-calibrated image sets Specialized task
wcs_getA bash WCS using gui-set data Creates A.fits
wcs_getB bash WCS using full catalog Creates B.fits
wcs_image_centers bash Compute Ra,Dec image centers. wcs_image_centers.out
wcs_list_proc bash Calibrate wcs for image list. See wcs_doall info
wcs_outline bash Overplot image outline Uses many tasks (good example!)
wcs_photom_zp bash Compute phtometric ZP Image must have WCS
wcs_prep bash Gather WCS calibration files. high level task
wcs_r_setup otw Collect revised WCS stars Builds new wcs_setup.out
wcs_radec_somehow bash Get Ra,Dec for image See "wcs_radec_somehow.output"
wcs_refine bash Refibe a rough WCS solution. ---
wcs_rename bash Rename wcs-calibrated image Makes FITS images
wcs_setup otw Collect WCS stars Builds wcs_setup.out
wcs_stats_fitslist bash Compile WCS statistics. O2SO
wcs_trs bash Test trs method for WCS. O2SO
wcs0 otw Derive WCS0 solution Results to *.info file
wcs0_trans otw Apply a WCS0 solution O2SO
wcs1 bash Derive WCS1 solution Results to *.fits header
wcsf bash Derive WCS WCS for FITS images
wcsf_* bash Derive WCS (all codes) WCS for FITS images (Apr2018)
wcsf_defaults bash Build a local WCSF.DEFAULTS file WCSF_DEFAULTS
wcsf_final bash Derive final WCS solution wcs step
wcsf_imgcat bash Find sources for astrometry wcs step
wcsf_rough bash Derive rough WCS wcs step
wcsf_viscat bash Grapically confirm WCS wcs step
wgen bash Survey directory for images fullpath name list
wheredata bash Establish HET data directory BaseDir,Date
wsol_find bash Find local wavelength solution file O2SO
xpa+ds9 general General xpa info. Good xpa Info
xy_headstrip bash Strip header from file of XY data O2SO
xycirc_markII otw generate X,Y on a circle O2SO
xyfitter bash Fit a curve to XY data Very Useful!
xyplotter bash Make plots from multiple table files O2SO
xyplotter_auto bash Make plots from a table file Lots of PRACTICAL EXAMPLES
xy_tranrot_ otw Coordinate transformation methods Suite of tools
xy2circ_reg bash Make ds9 circle regions input X,Y file
xy2sky wcstools Convert X,Y to Ra,Dec via WCS D.Mink, saord
xy2sky_float_2_psfind.py python Convert Ra,Dec list O2SO
xya otw Compute position angle from XY O2SO, BEST 0-360 Position angles
xya_list otw Compute angle from a list of XY O2SO
xycirc otw Generate X,Y on a circle. OS2O
xyds9 otw Get ds9 X,Y,Text specify type,color
xyds9pf otw Center ds9 circle regions specify type,color
xymake_circles.py python Build physical regions file. Make *.cdfp.ref file
xyoff otw Compute coordinate offsets O2SO
XYP lmgf Interactively plot XY data. NO LONGER MAINTAINED
xyr_circles_ds9.py python Build ds9 circle region string O2SO, optional flags
xyrotate otw Rotate (X,Y) about Xo,Yo O2SO
xy_shift_stats otw Measure small XY shifts Uses mido.out in *.info position
ybsc_cat otw Query the Yale BSC observing tool
ybsc_skyhex otw Select Yale BSC HET tracks observing tool
zpclean bash Graphically derive ZPSEC stats. zpclean.out
zpmido bash Derive photometric ZP of one image. ZP+ in header
zpmido_table bash Compile ZP table. basename.zp.table
zpmido_table_markII bash Compile ZP table. basename.zp.table
zpmido_table_values otw Compute ZP values. zpmido_table_values.out
zpstars otw Assemble data for ZP calibration. O2SO+

Acronyms used in the above scocodes table:
  1. CDFP: CoorDinate Floating Point (a fixed file type I adopted for many WCS applications)
  2. O2SO: Output to Standard Out
  3. O2SO+: Output to Standard Out and hardcoded files
  4. PSC: Point Source Catalog
  5. WCS: World Coordinate System


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